STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_1938KEGG: fno:Fnod_1074 metal dependent phosphohydrolase. (360 aa)    
Predicted Functional Partners:
Pmob_0946
KEGG: tme:Tmel_0420 hypothetical protein.
  
     0.766
Pmob_0198
PFAM: O-antigen polymerase; KEGG: fno:Fnod_0515 O-antigen polymerase.
 
     0.754
Pmob_1228
PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: tpt:Tpet_0472 surface antigen (D15).
  
    0.734
Pmob_1101
PFAM: UvrD/REP helicase; KEGG: tme:Tmel_0419 UvrD/REP helicase.
  
     0.717
Pmob_1611
LVIVD repeat protein; PFAM: Fibronectin type III domain protein; LVIVD repeat protein; KEGG: mma:MM_0391 hypothetical protein.
  
     0.712
Pmob_1087
Hypothetical protein; KEGG: rba:RB13291 general secretion pathway protein D (outD); Belongs to the bacterial secretin family.
  
     0.672
Pmob_0959
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tme:Tmel_1405 hypothetical protein.
  
     0.641
Pmob_1613
PFAM: polysaccharide export protein; KEGG: tme:Tmel_0660 polysaccharide export protein.
  
    0.627
Pmob_0824
KEGG: ppr:PBPRB1987 hypothetical protein.
  
     0.625
Pmob_1372
PFAM: Lytic transglycosylase catalytic; KEGG: mxa:MXAN_4628 transglycosylase SLT domain protein.
 
     0.620
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.