STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP57636.1DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. (446 aa)    
Predicted Functional Partners:
SEP57625.1
Protein of unknown function.
 
     0.903
SEQ75815.1
Type VII secretion integral membrane protein EccD.
  
 
 0.868
SEP57653.1
Hypothetical protein.
     
 0.834
SEQ56958.1
SMI1 / KNR4 family (SUKH-1).
   
 
 0.818
SEQ75741.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
   
 
 0.818
SEQ75761.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
   
 
 0.818
SEP62285.1
Protein of unknown function.
 
     0.789
SEP57548.1
Hypothetical protein.
 
  
 0.707
SEP68565.1
Cell division protein FtsQ; Essential cell division protein.
   
 
 0.628
SEP57593.1
Mobile element transfer protein.
       0.581
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.