STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP58097.1Endo-1,4-beta-xylanase. (387 aa)    
Predicted Functional Partners:
SEQ82573.1
Ricin-type beta-trefoil lectin domain-containing protein.
 
   0.882
SEQ70130.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.787
SEP65938.1
Esterase, PHB depolymerase family.
 
 
 0.752
SEQ77682.1
Cellulose binding domain-containing protein.
  
     0.739
SEP90213.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.709
SEQ16021.1
Glycosyl hydrolase family 115.
 
     0.706
SEP60999.1
Arabinan endo-1,5-alpha-L-arabinosidase.
 
  
  0.703
SEQ74914.1
Beta-glucosidase.
  
  
 0.697
SEQ46185.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.670
SEQ94721.1
alpha-L-fucosidase 2.
  
     0.662
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.