STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP62882.1Superoxide dismutase, Cu-Zn family. (248 aa)    
Predicted Functional Partners:
SEP57142.1
Copper chaperone CopZ.
   
 0.996
SER01674.1
Copper chaperone CopZ.
   
 0.996
SEP67249.1
Ubiquinol-cytochrome c reductase cytochrome b subunit.
    
 
 0.941
SER02942.1
Ubiquinol-cytochrome c reductase cytochrome b subunit.
    
 
 0.941
SEQ00732.1
Hypothetical protein.
    
   0.932
SEQ33682.1
Protein of unknown function.
    
   0.932
SEP97266.1
Thiol-disulfide isomerase or thioredoxin.
   
 0.920
SEQ34748.1
Thiol-disulfide isomerase or thioredoxin.
   
 0.920
SEQ50028.1
Thiol-disulfide isomerase or thioredoxin.
   
 0.920
SEP81599.1
Glycine/D-amino acid oxidase.
    
 
 0.918
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.