STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP63280.1ATP-binding cassette, subfamily C. (644 aa)    
Predicted Functional Partners:
SEP63219.1
Protein kinase domain-containing protein.
 
  
 0.962
SEP63267.1
ATP-binding cassette, subfamily B.
 
   
0.907
SEQ65963.1
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein.
   
 
0.848
SEQ65981.1
NHLM bacteriocin system ABC transporter, ATP-binding protein.
   
 
0.848
SEQ00374.1
ATP-binding cassette, subfamily C, CydCD.
  
 
 
0.650
SEQ87634.1
ATPase family associated with various cellular activities (AAA).
  
 
  0.628
SEQ91009.1
Biotin carboxylase.
   
 0.563
SEP90377.1
Type VII secretion AAA-ATPase EccA.
    
 0.495
SEQ34443.1
Right handed beta helix region.
    
 0.495
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.491
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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