STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP66012.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (252 aa)    
Predicted Functional Partners:
SEQ58448.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
 
 0.917
SEQ12804.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 0.795
SEQ15977.1
Predicted chitinase.
    
 0.762
SEQ85349.1
Hemolysin-type calcium-binding repeat-containing protein.
    
 0.733
SEP66034.1
Lysophospholipase L1.
  
 
 0.717
SEQ00841.1
Cellulase (glycosyl hydrolase family 5).
  
 
 0.690
SEQ46185.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
  
  0.656
SEP56545.1
Beta-glucosidase.
    
 0.601
SEP84463.1
Beta-glucosidase.
    
 0.601
SEQ37081.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
    
 0.601
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.