STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP68162.1Phytoene dehydrogenase-related protein. (503 aa)    
Predicted Functional Partners:
SEQ38804.1
Phytoene synthase.
 
 
 0.958
SER00619.1
All-trans-retinol 13,14-reductase.
 
  
  0.884
SEP68182.1
Transcriptional regulator, TetR family.
     
 0.852
SEP82999.1
Farnesyl-diphosphate farnesyltransferase.
 
 
 0.846
SEP83022.1
Squalene synthase HpnC.
 
 
 0.782
SEQ38812.1
Phytoene desaturase.
 
  
 
0.733
SEP68213.1
Hypothetical protein.
       0.678
SEP72574.1
Magnesium chelatase subunit D.
 
 
 0.649
SEP68271.1
Protein of unknown function.
       0.646
SEQ38712.1
Lycopene beta-cyclase.
  
 
 0.645
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.