STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP68241.1Methyltransferase domain-containing protein. (260 aa)    
Predicted Functional Partners:
SEP68213.1
Hypothetical protein.
 
     0.826
SEP68271.1
Protein of unknown function.
       0.759
SEP68182.1
Transcriptional regulator, TetR family.
   
   0.712
SEQ05519.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.666
SEQ85806.1
Amino acid adenylation domain-containing protein.
    
 0.644
SEQ84808.1
Amino acid adenylation domain-containing protein.
    
 0.644
SER00694.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
    
 0.644
SER00747.1
Nonribosomal peptide synthetase DhbF/pristinamycin I synthase-3 and 4.
    
 0.644
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.636
SEP73411.1
Phosphoserine phosphatase.
  
 
  0.499
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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