STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP70348.1LasA protease. (418 aa)    
Predicted Functional Partners:
SEP86528.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
  
 0.622
SEQ01461.1
NAD(P)H-binding.
  
     0.574
SEP57681.1
2'-5' RNA ligase superfamily protein.
  
     0.507
SEP70324.1
Streptogrisin B.
       0.465
SEP70366.1
Hypothetical protein.
       0.446
SEP86895.1
AraC-type DNA-binding protein.
  
     0.443
SEP89958.1
Thiamine kinase.
  
  
  0.432
SEQ05974.1
DNA-binding transcriptional regulator, PadR family.
  
     0.421
SEQ23641.1
Trypsin.
  
     0.410
SEQ79286.1
Hypothetical protein.
  
     0.408
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.