STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP71858.1Lysophospholipase L1. (279 aa)    
Predicted Functional Partners:
SEP71910.1
Pectinesterase.
  
 0.985
SEQ25336.1
Ricin-type beta-trefoil lectin domain-like.
 
   0.907
SEQ01948.1
Hypothetical protein.
 
   0.899
SEQ12684.1
Carbohydrate binding module (family 6).
 
  0.883
SEP71807.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.843
SEQ78699.1
Hypothetical protein.
 
   0.828
SEP71878.1
Pectate lyase.
 
  
  0.790
SEP60309.1
Endo-1,4-beta-xylanase.
 
 0.776
SEQ12804.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 0.761
SEQ90943.1
Endo-1,4-beta-xylanase.
 
 0.753
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.