STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP82927.1Protein-tyrosine phosphatase. (264 aa)    
Predicted Functional Partners:
SEQ50699.1
NADH-quinone oxidoreductase subunit M.
    
 
 0.960
SEQ51174.1
NADH-quinone oxidoreductase subunit M.
    
 
 0.960
SER03090.1
NADH-quinone oxidoreductase subunit M.
    
 
 0.960
SEP98327.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
   0.951
SEQ05271.1
Ferredoxin, 2Fe-2S.
    
   0.951
SEQ84609.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
   0.951
SEQ03899.1
Carbonic anhydrase.
   
   0.946
SEP82208.1
ADP-heptose:LPS heptosyltransferase.
  
   0.944
SEP82324.1
ADP-heptose:LPS heptosyltransferase.
  
   0.944
SEQ11229.1
Sulfate permease, MFS superfamily.
    
   0.944
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.