STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP87445.1Hypothetical protein. (177 aa)    
Predicted Functional Partners:
SEP56416.1
Part of AAA domain-containing protein.
  
    0.891
SEQ16035.1
Protein of unknown function.
 
    0.804
SEQ99393.1
Hypothetical protein.
  
    0.771
SEP62414.1
N-6 DNA Methylase.
  
    0.759
SEQ18756.1
SRSO17 transposase.
   
    0.738
SEQ99520.1
DDE superfamily endonuclease.
   
    0.738
SEP65655.1
Hypothetical protein.
 
     0.663
SEQ14447.1
Protein of unknown function.
 
     0.647
SEP88460.1
Protein of unknown function.
  
     0.633
SEQ02484.1
Hypothetical protein.
  
     0.612
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.