Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEP81515.1 | SEP81538.1 | SAMN05216481_10273 | SAMN05216481_10274 | Uncharacterized conserved protein YecE, DUF72 family. | Endonuclease III. | 0.805 |
SEP81538.1 | SEP81515.1 | SAMN05216481_10274 | SAMN05216481_10273 | Endonuclease III. | Uncharacterized conserved protein YecE, DUF72 family. | 0.805 |
SEP81538.1 | SEP82663.1 | SAMN05216481_10274 | SAMN05216481_102124 | Endonuclease III. | Protein of unknown function. | 0.845 |
SEP81538.1 | SEP99107.1 | SAMN05216481_10274 | SAMN05216481_103175 | Endonuclease III. | YidC/Oxa1 family membrane protein insertase. | 0.726 |
SEP81538.1 | SEP99136.1 | SAMN05216481_10274 | SAMN05216481_103176 | Endonuclease III. | spoIIIJ-associated protein. | 0.725 |
SEP81538.1 | SEQ15537.1 | SAMN05216481_10274 | SAMN05216481_104222 | Endonuclease III. | YidC/Oxa1 family membrane protein insertase. | 0.726 |
SEP81538.1 | SEQ44398.1 | SAMN05216481_10274 | SAMN05216481_10862 | Endonuclease III. | Exodeoxyribonuclease-3. | 0.947 |
SEP81538.1 | SEQ55892.1 | SAMN05216481_10274 | SAMN05216481_11039 | Endonuclease III. | Exodeoxyribonuclease-3. | 0.947 |
SEP81538.1 | nfo | SAMN05216481_10274 | SAMN05216481_101713 | Endonuclease III. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.909 |
SEP81538.1 | polA | SAMN05216481_10274 | SAMN05216481_101814 | Endonuclease III. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.644 |
SEP81538.1 | rho | SAMN05216481_10274 | SAMN05216481_113109 | Endonuclease III. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.805 |
SEP82663.1 | SEP81538.1 | SAMN05216481_102124 | SAMN05216481_10274 | Protein of unknown function. | Endonuclease III. | 0.845 |
SEP99107.1 | SEP81538.1 | SAMN05216481_103175 | SAMN05216481_10274 | YidC/Oxa1 family membrane protein insertase. | Endonuclease III. | 0.726 |
SEP99107.1 | SEP99136.1 | SAMN05216481_103175 | SAMN05216481_103176 | YidC/Oxa1 family membrane protein insertase. | spoIIIJ-associated protein. | 0.987 |
SEP99107.1 | SEQ15537.1 | SAMN05216481_103175 | SAMN05216481_104222 | YidC/Oxa1 family membrane protein insertase. | YidC/Oxa1 family membrane protein insertase. | 0.913 |
SEP99107.1 | rho | SAMN05216481_103175 | SAMN05216481_113109 | YidC/Oxa1 family membrane protein insertase. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.815 |
SEP99136.1 | SEP81538.1 | SAMN05216481_103176 | SAMN05216481_10274 | spoIIIJ-associated protein. | Endonuclease III. | 0.725 |
SEP99136.1 | SEP99107.1 | SAMN05216481_103176 | SAMN05216481_103175 | spoIIIJ-associated protein. | YidC/Oxa1 family membrane protein insertase. | 0.987 |
SEP99136.1 | SEQ15537.1 | SAMN05216481_103176 | SAMN05216481_104222 | spoIIIJ-associated protein. | YidC/Oxa1 family membrane protein insertase. | 0.807 |
SEP99136.1 | rho | SAMN05216481_103176 | SAMN05216481_113109 | spoIIIJ-associated protein. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.780 |
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