STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP97586.1Ornithine cyclodeaminase/alanine dehydrogenase, mu-crystallin family. (302 aa)    
Predicted Functional Partners:
SER01596.1
Cysteine synthase A.
  
 
 0.864
SEQ98856.1
L-proline dehydrogenase.
  
 
 0.852
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.848
SEQ52968.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.806
SEQ86837.1
Alanine dehydrogenase.
    
  0.792
SEQ91009.1
Biotin carboxylase.
  
 
 0.747
SEP56857.1
Agmatinase; Belongs to the arginase family.
  
 
 0.694
SEP95910.1
Siderophore synthetase component.
  
 
  0.636
SEQ81139.1
Siderophore synthetase component.
  
 
  0.636
argH
Argininosuccinate lyase.
    
 0.627
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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