STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP98546.1LPXTG-site transpeptidase (sortase) family protein. (249 aa)    
Predicted Functional Partners:
SEP98606.1
Hypothetical protein.
 
   
 0.910
SEP98567.1
Sortase A.
 
    
0.854
SEP98590.1
Para-aminobenzoate synthetase component 2.
       0.838
SEP98629.1
Uncharacterized conserved protein YlxW, UPF0749 family.
       0.771
crgA
Uncharacterised protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
       0.716
SEQ77073.1
Predicted arabinose efflux permease, MFS family.
  
     0.633
SEQ79266.1
Protein of unknown function.
  
     0.536
SEQ85349.1
Hemolysin-type calcium-binding repeat-containing protein.
    
 0.466
SEP56175.1
Sortase family protein.
      
 0.418
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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