STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ02453.1Endonuclease, Uma2 family (restriction endonuclease fold). (191 aa)    
Predicted Functional Partners:
SEP57249.1
Helix-turn-helix.
  
     0.663
SEQ02427.1
Hypothetical protein.
       0.624
SEP56416.1
Part of AAA domain-containing protein.
  
     0.558
SEQ73474.1
Hypothetical protein.
  
     0.545
SEQ62391.1
Hypothetical protein.
  
     0.540
SEP56437.1
Hypothetical protein.
  
     0.533
SEQ39168.1
FAD/FMN-containing dehydrogenase.
  
     0.515
SEQ82041.1
Hypothetical protein.
  
     0.510
SEQ43427.1
Hypothetical protein.
  
     0.506
SEQ84131.1
S-adenosyl methyltransferase.
  
     0.502
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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