Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEP62761.1 | SEQ02845.1 | SAMN05216481_101487 | SAMN05216481_103347 | AraC family transcriptional regulator. | Sigma-70, region 4. | 0.948 |
SEP62761.1 | SER00995.1 | SAMN05216481_101487 | SAMN05216481_1275 | AraC family transcriptional regulator. | Signal transduction histidine kinase. | 0.824 |
SEP62761.1 | rpoA | SAMN05216481_101487 | SAMN05216481_109170 | AraC family transcriptional regulator. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SEP62761.1 | rpoB | SAMN05216481_101487 | SAMN05216481_109119 | AraC family transcriptional regulator. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.971 |
SEP62761.1 | rpoC | SAMN05216481_101487 | SAMN05216481_109120 | AraC family transcriptional regulator. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.967 |
SEP62761.1 | rpoZ | SAMN05216481_101487 | SAMN05216481_102528 | AraC family transcriptional regulator. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.967 |
SEP65891.1 | SEQ02845.1 | SAMN05216481_101631 | SAMN05216481_103347 | Arsenate reductase; Belongs to the ArsC family. | Sigma-70, region 4. | 0.895 |
SEP65891.1 | rpoA | SAMN05216481_101631 | SAMN05216481_109170 | Arsenate reductase; Belongs to the ArsC family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.959 |
SEP65891.1 | rpoB | SAMN05216481_101631 | SAMN05216481_109119 | Arsenate reductase; Belongs to the ArsC family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.906 |
SEP65891.1 | rpoC | SAMN05216481_101631 | SAMN05216481_109120 | Arsenate reductase; Belongs to the ArsC family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.955 |
SEP65891.1 | rpoZ | SAMN05216481_101631 | SAMN05216481_102528 | Arsenate reductase; Belongs to the ArsC family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.913 |
SEP87649.1 | SEQ02845.1 | SAMN05216481_102361 | SAMN05216481_103347 | DNA-binding transcriptional regulator, MerR family. | Sigma-70, region 4. | 0.962 |
SEP87649.1 | SER00995.1 | SAMN05216481_102361 | SAMN05216481_1275 | DNA-binding transcriptional regulator, MerR family. | Signal transduction histidine kinase. | 0.769 |
SEP87649.1 | rpoA | SAMN05216481_102361 | SAMN05216481_109170 | DNA-binding transcriptional regulator, MerR family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.983 |
SEP87649.1 | rpoB | SAMN05216481_102361 | SAMN05216481_109119 | DNA-binding transcriptional regulator, MerR family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SEP87649.1 | rpoC | SAMN05216481_102361 | SAMN05216481_109120 | DNA-binding transcriptional regulator, MerR family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.983 |
SEP87649.1 | rpoZ | SAMN05216481_102361 | SAMN05216481_102528 | DNA-binding transcriptional regulator, MerR family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.983 |
SEQ02845.1 | SEP62761.1 | SAMN05216481_103347 | SAMN05216481_101487 | Sigma-70, region 4. | AraC family transcriptional regulator. | 0.948 |
SEQ02845.1 | SEP65891.1 | SAMN05216481_103347 | SAMN05216481_101631 | Sigma-70, region 4. | Arsenate reductase; Belongs to the ArsC family. | 0.895 |
SEQ02845.1 | SEP87649.1 | SAMN05216481_103347 | SAMN05216481_102361 | Sigma-70, region 4. | DNA-binding transcriptional regulator, MerR family. | 0.962 |
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