STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ15580.1TIGR03086 family protein. (204 aa)    
Predicted Functional Partners:
SEP71748.1
Predicted dehydrogenase.
 
    0.647
SEP71713.1
Multiple sugar transport system permease protein.
  
    0.624
SEP71782.1
Methane oxygenase PmoA.
  
    0.599
SEP71613.1
Hypothetical protein.
       0.595
SEP71621.1
DNA-binding transcriptional regulator, GntR family.
       0.595
SEP71654.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
       0.595
SEP71681.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.595
SEP71723.1
Multiple sugar transport system permease protein.
       0.595
SEQ15558.1
Hypothetical protein.
       0.563
SEP69327.1
Hypothetical protein.
  
     0.444
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.