STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ25316.140-residue YVTN family beta-propeller repeat-containing protein. (442 aa)    
Predicted Functional Partners:
SEQ41264.1
Right handed beta helix region.
 
 0.961
SEP67203.1
Ubiquinol-cytochrome c reductase cytochrome c subunit.
  
 0.955
SEQ11463.1
WD40-like Beta Propeller Repeat.
   
   0.901
SEP69698.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.886
SEQ35428.1
Nonribosomal peptide synthase.
  
    0.768
SEQ95381.1
Amino acid adenylation domain-containing protein.
  
    0.768
SER04084.1
Phosphopantetheine attachment site.
  
    0.768
SEQ85806.1
Amino acid adenylation domain-containing protein.
  
    0.737
SEQ84808.1
Amino acid adenylation domain-containing protein.
  
    0.732
SER00694.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
    0.732
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.