STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ27807.1Uncharacterized membrane protein. (166 aa)    
Predicted Functional Partners:
SEQ65490.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.557
SEQ96492.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.526
SEQ65504.1
AraC-type DNA-binding protein.
 
     0.511
SEQ96474.1
AraC-type DNA-binding protein.
 
     0.482
SEQ27723.1
ABC-2 type transport system permease protein.
 
     0.459
SEP61761.1
Short C-terminal domain-containing protein.
  
     0.453
SEQ01461.1
NAD(P)H-binding.
 
     0.439
SEQ05408.1
Winged helix DNA-binding domain-containing protein.
  
     0.430
SEQ27772.1
Hypothetical protein.
       0.419
SEQ27750.1
D-alanyl-D-alanine carboxypeptidase.
 
     0.411
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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