Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEP88190.1 | SEP89641.1 | SAMN05216481_102388 | SAMN05216481_102455 | Protein of unknown function. | Hypothetical protein. | 0.950 |
SEP88190.1 | SEQ34396.1 | SAMN05216481_102388 | SAMN05216481_106136 | Protein of unknown function. | Nucleotide-binding universal stress protein, UspA family. | 0.446 |
SEP88190.1 | SEQ43453.1 | SAMN05216481_102388 | SAMN05216481_10817 | Protein of unknown function. | Hypothetical protein. | 0.739 |
SEP89641.1 | SEP88190.1 | SAMN05216481_102455 | SAMN05216481_102388 | Hypothetical protein. | Protein of unknown function. | 0.950 |
SEP89641.1 | SEQ34396.1 | SAMN05216481_102455 | SAMN05216481_106136 | Hypothetical protein. | Nucleotide-binding universal stress protein, UspA family. | 0.430 |
SEP89641.1 | SEQ43453.1 | SAMN05216481_102455 | SAMN05216481_10817 | Hypothetical protein. | Hypothetical protein. | 0.950 |
SEQ34396.1 | SEP88190.1 | SAMN05216481_106136 | SAMN05216481_102388 | Nucleotide-binding universal stress protein, UspA family. | Protein of unknown function. | 0.446 |
SEQ34396.1 | SEP89641.1 | SAMN05216481_106136 | SAMN05216481_102455 | Nucleotide-binding universal stress protein, UspA family. | Hypothetical protein. | 0.430 |
SEQ34396.1 | SEQ34415.1 | SAMN05216481_106136 | SAMN05216481_106137 | Nucleotide-binding universal stress protein, UspA family. | Hypothetical protein. | 0.450 |
SEQ34396.1 | SEQ43453.1 | SAMN05216481_106136 | SAMN05216481_10817 | Nucleotide-binding universal stress protein, UspA family. | Hypothetical protein. | 0.407 |
SEQ34396.1 | SER00995.1 | SAMN05216481_106136 | SAMN05216481_1275 | Nucleotide-binding universal stress protein, UspA family. | Signal transduction histidine kinase. | 0.479 |
SEQ34396.1 | pafA | SAMN05216481_106136 | SAMN05216481_11518 | Nucleotide-binding universal stress protein, UspA family. | Proteasome accessory factor A; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.402 |
SEQ34396.1 | whiB-3 | SAMN05216481_106136 | SAMN05216481_104328 | Nucleotide-binding universal stress protein, UspA family. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.457 |
SEQ34415.1 | SEQ34396.1 | SAMN05216481_106137 | SAMN05216481_106136 | Hypothetical protein. | Nucleotide-binding universal stress protein, UspA family. | 0.450 |
SEQ43453.1 | SEP88190.1 | SAMN05216481_10817 | SAMN05216481_102388 | Hypothetical protein. | Protein of unknown function. | 0.739 |
SEQ43453.1 | SEP89641.1 | SAMN05216481_10817 | SAMN05216481_102455 | Hypothetical protein. | Hypothetical protein. | 0.950 |
SEQ43453.1 | SEQ34396.1 | SAMN05216481_10817 | SAMN05216481_106136 | Hypothetical protein. | Nucleotide-binding universal stress protein, UspA family. | 0.407 |
SER00995.1 | SEQ34396.1 | SAMN05216481_1275 | SAMN05216481_106136 | Signal transduction histidine kinase. | Nucleotide-binding universal stress protein, UspA family. | 0.479 |
pafA | SEQ34396.1 | SAMN05216481_11518 | SAMN05216481_106136 | Proteasome accessory factor A; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | Nucleotide-binding universal stress protein, UspA family. | 0.402 |
pafA | whiB-3 | SAMN05216481_11518 | SAMN05216481_104328 | Proteasome accessory factor A; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.419 |
page 1 of 2