STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ34592.1Geranylgeranyl reductase family. (405 aa)    
Predicted Functional Partners:
SEQ34714.1
Electron transfer flavoprotein beta subunit.
  
 
 0.873
SEQ34607.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
       0.795
SEQ85806.1
Amino acid adenylation domain-containing protein.
  
 
  0.678
SEP81599.1
Glycine/D-amino acid oxidase.
  
 
 0.663
SEQ95364.1
Pyochelin synthetase.
    
  0.627
SEQ34691.1
Electron transfer flavoprotein alpha subunit apoprotein.
  
 
 0.609
SEQ23136.1
Signal transduction histidine kinase.
       0.595
SEQ34575.1
Hypothetical protein.
       0.580
SEQ84808.1
Amino acid adenylation domain-containing protein.
  
 
  0.528
SER00747.1
Nonribosomal peptide synthetase DhbF/pristinamycin I synthase-3 and 4.
  
 
  0.528
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.