Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEP63823.1 | SEQ41097.1 | SAMN05216481_101539 | SAMN05216481_107174 | Phenazine biosynthesis protein PhzF family. | Lamin Tail Domain. | 0.595 |
SEP83213.1 | SEQ41097.1 | SAMN05216481_102149 | SAMN05216481_107174 | CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Lamin Tail Domain. | 0.564 |
SEP83213.1 | SEQ90739.1 | SAMN05216481_102149 | SAMN05216481_11975 | CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Hypothetical protein. | 0.410 |
SEQ02244.1 | SEQ41097.1 | SAMN05216481_103317 | SAMN05216481_107174 | Repeat domain-containing protein. | Lamin Tail Domain. | 0.619 |
SEQ02244.1 | SEQ90739.1 | SAMN05216481_103317 | SAMN05216481_11975 | Repeat domain-containing protein. | Hypothetical protein. | 0.773 |
SEQ18950.1 | SEQ41097.1 | SAMN05216481_104372 | SAMN05216481_107174 | GMP synthase (glutamine-hydrolysing). | Lamin Tail Domain. | 0.695 |
SEQ18950.1 | guaA | SAMN05216481_104372 | SAMN05216481_1124 | GMP synthase (glutamine-hydrolysing). | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.793 |
SEQ18950.1 | guaB | SAMN05216481_104372 | SAMN05216481_109205 | GMP synthase (glutamine-hydrolysing). | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.999 |
SEQ41097.1 | SEP63823.1 | SAMN05216481_107174 | SAMN05216481_101539 | Lamin Tail Domain. | Phenazine biosynthesis protein PhzF family. | 0.595 |
SEQ41097.1 | SEP83213.1 | SAMN05216481_107174 | SAMN05216481_102149 | Lamin Tail Domain. | CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.564 |
SEQ41097.1 | SEQ02244.1 | SAMN05216481_107174 | SAMN05216481_103317 | Lamin Tail Domain. | Repeat domain-containing protein. | 0.619 |
SEQ41097.1 | SEQ18950.1 | SAMN05216481_107174 | SAMN05216481_104372 | Lamin Tail Domain. | GMP synthase (glutamine-hydrolysing). | 0.695 |
SEQ41097.1 | SEQ75291.1 | SAMN05216481_107174 | SAMN05216481_114104 | Lamin Tail Domain. | RIP metalloprotease RseP. | 0.595 |
SEQ41097.1 | SEQ90739.1 | SAMN05216481_107174 | SAMN05216481_11975 | Lamin Tail Domain. | Hypothetical protein. | 0.673 |
SEQ41097.1 | dxr | SAMN05216481_107174 | SAMN05216481_114103 | Lamin Tail Domain. | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 0.595 |
SEQ41097.1 | guaA | SAMN05216481_107174 | SAMN05216481_1124 | Lamin Tail Domain. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.695 |
SEQ41097.1 | guaB | SAMN05216481_107174 | SAMN05216481_109205 | Lamin Tail Domain. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.708 |
SEQ41097.1 | rnpA | SAMN05216481_107174 | SAMN05216481_103173 | Lamin Tail Domain. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.734 |
SEQ75291.1 | SEQ41097.1 | SAMN05216481_114104 | SAMN05216481_107174 | RIP metalloprotease RseP. | Lamin Tail Domain. | 0.595 |
SEQ75291.1 | dxr | SAMN05216481_114104 | SAMN05216481_114103 | RIP metalloprotease RseP. | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 0.945 |
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