STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ46013.1Protein of unknown function. (69 aa)    
Predicted Functional Partners:
SEQ46034.1
Helix-turn-helix domain-containing protein.
 
     0.837
SEQ46045.1
Histidine kinase-like ATPase domain-containing protein.
 
     0.643
SEQ26409.1
Protein of unknown function.
  
     0.593
SEP58008.1
Protein of unknown function.
  
     0.553
SEP56520.1
Signal transduction histidine kinase.
  
     0.487
SER02602.1
Signal transduction histidine kinase.
  
     0.487
SEP85682.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.452
SEQ01124.1
Hypothetical protein.
  
     0.437
SEQ45979.1
Helix-turn-helix domain-containing protein.
 
     0.428
SEQ46775.1
Signal transduction histidine kinase.
  
     0.428
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.