STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ58738.1Zinicin-like metallopeptidase. (131 aa)    
Predicted Functional Partners:
SEQ58758.1
Protein of unknown function.
 
     0.720
SEP61895.1
Protein of unknown function.
  
     0.716
SEQ98536.1
Cobalamin-independent synthase, Catalytic domain.
  
     0.651
SEQ58782.1
Phosphomannomutase.
       0.595
SEQ58795.1
Hypothetical protein; Belongs to the UPF0434 family.
       0.595
SEP98871.1
Transmembrane protein of unknown function.
  
     0.549
SEQ26922.1
Protein of unknown function.
  
     0.539
SEP68660.1
YggT family protein.
 
     0.528
SEQ56696.1
Transcriptional regulator, TetR family.
  
     0.497
SEQ58847.1
Mannose-6-phosphate isomerase, type 1.
       0.479
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
Server load: low (22%) [HD]