STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ67208.1Carbohydrate binding domain-containing protein. (853 aa)    
Predicted Functional Partners:
SEP60309.1
Endo-1,4-beta-xylanase.
 
 
 0.766
SEQ90943.1
Endo-1,4-beta-xylanase.
 
 
 0.766
SEP90558.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.707
SEP60999.1
Arabinan endo-1,5-alpha-L-arabinosidase.
 
  
 0.688
SEQ37818.1
Endo-1,4-beta-xylanase.
  
  
 0.654
SEP85829.1
Aldo/keto reductase.
    
  0.634
SEQ12684.1
Carbohydrate binding module (family 6).
  
  
 0.563
SEQ82573.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
  
  0.563
SEP58097.1
Endo-1,4-beta-xylanase.
  
  
 0.540
SEP85148.1
Hypothetical protein.
  
     0.516
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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