STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ75197.1DNA-binding transcriptional regulator, PadR family. (179 aa)    
Predicted Functional Partners:
SEQ75245.1
Hypothetical protein.
 
     0.887
SEQ75226.1
Putative ABC transport system ATP-binding protein.
 
     0.829
SEQ45324.1
Sirohydrochlorin ferrochelatase.
   
    0.796
SEQ61143.1
FtsX-like permease family protein.
 
   
 0.772
SEQ75175.1
Hypothetical protein.
       0.768
SEQ12108.1
DNA-binding transcriptional regulator, PadR family.
  
     0.628
SEQ75144.1
Putative acetyltransferase.
 
     0.612
SEQ40732.1
DNA-binding transcriptional regulator, PadR family.
  
     0.577
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
  
    0.502
SEQ75291.1
RIP metalloprotease RseP.
       0.493
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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