node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEQ78863.1 | SEQ78957.1 | SAMN05216481_115112 | SAMN05216481_115117 | KDO2-lipid IV(A) lauroyltransferase. | DNA-binding regulatory protein, YebC/PmpR family. | 0.718 |
SEQ78863.1 | SEQ79031.1 | SAMN05216481_115112 | SAMN05216481_115121 | KDO2-lipid IV(A) lauroyltransferase. | Preprotein translocase subunit YajC. | 0.674 |
SEQ78863.1 | pdxS | SAMN05216481_115112 | SAMN05216481_115115 | KDO2-lipid IV(A) lauroyltransferase. | Pyridoxal phosphate synthase yaaD subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.741 |
SEQ78863.1 | pdxT | SAMN05216481_115112 | SAMN05216481_115116 | KDO2-lipid IV(A) lauroyltransferase. | 5'-phosphate synthase pdxT subunit; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.694 |
SEQ78863.1 | ruvA | SAMN05216481_115112 | SAMN05216481_115119 | KDO2-lipid IV(A) lauroyltransferase. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.656 |
SEQ78863.1 | ruvB | SAMN05216481_115112 | SAMN05216481_115120 | KDO2-lipid IV(A) lauroyltransferase. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.648 |
SEQ78863.1 | ruvC | SAMN05216481_115112 | SAMN05216481_115118 | KDO2-lipid IV(A) lauroyltransferase. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.656 |
SEQ78863.1 | secD-2 | SAMN05216481_115112 | SAMN05216481_115122 | KDO2-lipid IV(A) lauroyltransferase. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.454 |
SEQ78863.1 | secF | SAMN05216481_115112 | SAMN05216481_115123 | KDO2-lipid IV(A) lauroyltransferase. | Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.458 |
SEQ78957.1 | SEQ78863.1 | SAMN05216481_115117 | SAMN05216481_115112 | DNA-binding regulatory protein, YebC/PmpR family. | KDO2-lipid IV(A) lauroyltransferase. | 0.718 |
SEQ78957.1 | SEQ79031.1 | SAMN05216481_115117 | SAMN05216481_115121 | DNA-binding regulatory protein, YebC/PmpR family. | Preprotein translocase subunit YajC. | 0.696 |
SEQ78957.1 | pdxS | SAMN05216481_115117 | SAMN05216481_115115 | DNA-binding regulatory protein, YebC/PmpR family. | Pyridoxal phosphate synthase yaaD subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.915 |
SEQ78957.1 | pdxT | SAMN05216481_115117 | SAMN05216481_115116 | DNA-binding regulatory protein, YebC/PmpR family. | 5'-phosphate synthase pdxT subunit; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.939 |
SEQ78957.1 | rplS | SAMN05216481_115117 | SAMN05216481_11450 | DNA-binding regulatory protein, YebC/PmpR family. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.780 |
SEQ78957.1 | ruvA | SAMN05216481_115117 | SAMN05216481_115119 | DNA-binding regulatory protein, YebC/PmpR family. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.830 |
SEQ78957.1 | ruvB | SAMN05216481_115117 | SAMN05216481_115120 | DNA-binding regulatory protein, YebC/PmpR family. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.822 |
SEQ78957.1 | ruvC | SAMN05216481_115117 | SAMN05216481_115118 | DNA-binding regulatory protein, YebC/PmpR family. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.854 |
SEQ78957.1 | secD-2 | SAMN05216481_115117 | SAMN05216481_115122 | DNA-binding regulatory protein, YebC/PmpR family. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.734 |
SEQ78957.1 | secF | SAMN05216481_115117 | SAMN05216481_115123 | DNA-binding regulatory protein, YebC/PmpR family. | Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.746 |
SEQ79031.1 | SEQ78863.1 | SAMN05216481_115121 | SAMN05216481_115112 | Preprotein translocase subunit YajC. | KDO2-lipid IV(A) lauroyltransferase. | 0.674 |