Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEQ79266.1 | SEQ79286.1 | SAMN05216481_115134 | SAMN05216481_115135 | Protein of unknown function. | Hypothetical protein. | 0.888 |
SEQ79266.1 | SEQ79317.1 | SAMN05216481_115134 | SAMN05216481_115137 | Protein of unknown function. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.866 |
SEQ79266.1 | SEQ79350.1 | SAMN05216481_115134 | SAMN05216481_115139 | Protein of unknown function. | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 0.785 |
SEQ79266.1 | alaS | SAMN05216481_115134 | SAMN05216481_115136 | Protein of unknown function. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.866 |
SEQ79266.1 | aroB | SAMN05216481_115134 | SAMN05216481_115142 | Protein of unknown function. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.722 |
SEQ79266.1 | aroC | SAMN05216481_115134 | SAMN05216481_115140 | Protein of unknown function. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.722 |
SEQ79266.1 | aroK | SAMN05216481_115134 | SAMN05216481_115141 | Protein of unknown function. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.722 |
SEQ79266.1 | aroQ | SAMN05216481_115134 | SAMN05216481_115143 | Protein of unknown function. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.722 |
SEQ79266.1 | mltG | SAMN05216481_115134 | SAMN05216481_115138 | Protein of unknown function. | UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.785 |
SEQ79266.1 | rpsD-2 | SAMN05216481_115134 | SAMN05216481_115133 | Protein of unknown function. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.779 |
SEQ79286.1 | SEQ79266.1 | SAMN05216481_115135 | SAMN05216481_115134 | Hypothetical protein. | Protein of unknown function. | 0.888 |
SEQ79286.1 | SEQ79317.1 | SAMN05216481_115135 | SAMN05216481_115137 | Hypothetical protein. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.866 |
SEQ79286.1 | SEQ79350.1 | SAMN05216481_115135 | SAMN05216481_115139 | Hypothetical protein. | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 0.785 |
SEQ79286.1 | alaS | SAMN05216481_115135 | SAMN05216481_115136 | Hypothetical protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.866 |
SEQ79286.1 | aroB | SAMN05216481_115135 | SAMN05216481_115142 | Hypothetical protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.722 |
SEQ79286.1 | aroC | SAMN05216481_115135 | SAMN05216481_115140 | Hypothetical protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.722 |
SEQ79286.1 | aroK | SAMN05216481_115135 | SAMN05216481_115141 | Hypothetical protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.722 |
SEQ79286.1 | aroQ | SAMN05216481_115135 | SAMN05216481_115143 | Hypothetical protein. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.722 |
SEQ79286.1 | mltG | SAMN05216481_115135 | SAMN05216481_115138 | Hypothetical protein. | UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.785 |
SEQ79286.1 | rpsD-2 | SAMN05216481_115135 | SAMN05216481_115133 | Hypothetical protein. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.744 |
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