Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEQ79350.1 | SEQ79439.1 | SAMN05216481_115139 | SAMN05216481_115144 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | Adenylate kinase. | 0.576 |
SEQ79350.1 | SEQ79458.1 | SAMN05216481_115139 | SAMN05216481_115145 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | Xaa-Pro aminopeptidase. | 0.689 |
SEQ79350.1 | aroA | SAMN05216481_115139 | SAMN05216481_111154 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.998 |
SEQ79350.1 | aroB | SAMN05216481_115139 | SAMN05216481_115142 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.999 |
SEQ79350.1 | aroC | SAMN05216481_115139 | SAMN05216481_115140 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.996 |
SEQ79350.1 | aroK | SAMN05216481_115139 | SAMN05216481_115141 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.998 |
SEQ79350.1 | aroQ | SAMN05216481_115139 | SAMN05216481_115143 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.996 |
SEQ79350.1 | mltG | SAMN05216481_115139 | SAMN05216481_115138 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.964 |
SEQ79350.1 | trpE | SAMN05216481_115139 | SAMN05216481_101780 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | Anthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.915 |
SEQ79439.1 | SEQ79350.1 | SAMN05216481_115144 | SAMN05216481_115139 | Adenylate kinase. | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 0.576 |
SEQ79439.1 | SEQ79458.1 | SAMN05216481_115144 | SAMN05216481_115145 | Adenylate kinase. | Xaa-Pro aminopeptidase. | 0.889 |
SEQ79439.1 | aroB | SAMN05216481_115144 | SAMN05216481_115142 | Adenylate kinase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.781 |
SEQ79439.1 | aroC | SAMN05216481_115144 | SAMN05216481_115140 | Adenylate kinase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.806 |
SEQ79439.1 | aroK | SAMN05216481_115144 | SAMN05216481_115141 | Adenylate kinase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.787 |
SEQ79439.1 | aroQ | SAMN05216481_115144 | SAMN05216481_115143 | Adenylate kinase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.797 |
SEQ79439.1 | mltG | SAMN05216481_115144 | SAMN05216481_115138 | Adenylate kinase. | UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.718 |
SEQ79439.1 | tig | SAMN05216481_115144 | SAMN05216481_101265 | Adenylate kinase. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.735 |
SEQ79458.1 | SEQ79350.1 | SAMN05216481_115145 | SAMN05216481_115139 | Xaa-Pro aminopeptidase. | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 0.689 |
SEQ79458.1 | SEQ79439.1 | SAMN05216481_115145 | SAMN05216481_115144 | Xaa-Pro aminopeptidase. | Adenylate kinase. | 0.889 |
SEQ79458.1 | aroB | SAMN05216481_115145 | SAMN05216481_115142 | Xaa-Pro aminopeptidase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.852 |
page 1 of 4