STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ87230.1Gas vesicle synthesis protein GvpO. (108 aa)    
Predicted Functional Partners:
gvpA
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.973
SEQ87185.1
Gas vesicle synthesis protein GvpL/GvpF.
 
   
 0.966
SEQ87167.1
Gas vesicle protein G.
 
   
 0.963
SEQ87135.1
Hypothetical protein.
 
     0.937
SEP62622.1
Gas vesicle protein K.
 
   
 0.839
SEQ87148.1
Hypothetical protein.
       0.838
SEP62604.1
Gas vesicle synthesis protein GvpL/GvpF.
 
     0.773
SEP62659.1
Gas vesicle protein.
 
     0.771
SEQ94369.1
NADH dehydrogenase.
       0.595
SEQ87246.1
Peptidase inhibitor I78 family protein.
       0.453
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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