STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ95897.1mRNA interferase RelE/StbE. (81 aa)    
Predicted Functional Partners:
SEQ95873.1
Hypothetical protein.
   
   0.881
SEQ97011.1
Hypothetical protein.
   
   0.496
SEQ97428.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
   0.496
SER00041.1
Prevent-host-death family protein.
   
   0.496
SEQ23730.1
Antitoxin YefM; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
   0.483
SEQ57650.1
Prevent-host-death family protein.
   
   0.483
SEQ16598.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
    
   0.476
SEQ95908.1
Putative ABC transport system permease protein.
       0.429
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.