STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ97580.1DNA-binding transcriptional regulator, FadR family. (224 aa)    
Predicted Functional Partners:
SEQ97539.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.853
SEQ97595.1
Peptide/nickel transport system substrate-binding protein.
 
     0.820
SEQ97616.1
Peptide/nickel transport system permease protein.
 
     0.776
SEQ81709.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.695
SEQ97543.1
Sialidase-1.
 
     0.677
SEP98327.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.666
SEQ84609.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.666
SEQ81462.1
DNA-binding transcriptional regulator, FadR family.
  
     0.663
nanE
N-acylglucosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.663
SEQ11335.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.650
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.