STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER00389.1DNA-binding transcriptional activator of the SARP family. (664 aa)    
Predicted Functional Partners:
SEP64579.1
HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.543
SEQ24492.1
HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.543
SEP82850.1
Protein of unknown function.
  
     0.509
SER03606.1
Hypothetical protein.
  
     0.487
SER01830.1
Regulatory protein, luxR family.
  
  
 0.444
SER00374.1
Acyl-CoA carboxylase epsilon subunit.
       0.439
SER00347.1
Hypothetical protein.
       0.434
SER00995.1
Signal transduction histidine kinase.
  
  
 0.434
SEQ46034.1
Helix-turn-helix domain-containing protein.
  
    0.424
SEQ12239.1
Predicted ATPase.
 
 
 0.413
Your Current Organism:
Streptomyces radiopugnans
NCBI taxonomy Id: 403935
Other names: CGMCC 4.3519, DSM 41901, JCM 15480, S. radiopugnans, Streptomyces radiopugnans Mao et al. 2007, strain R97
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