STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIF44348.1Biotin synthesis protein BioY; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)    
Predicted Functional Partners:
ecfT
Cobalt ABC transporter permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.955
cbiO
Cobalt ABC transporter ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 0.945
cbiO-2
Cobalt ABC transporter ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 0.945
AIF44284.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.936
AIF42298.1
Biotin biosynthesis protein BioC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.923
AIF42930.1
Biotin biosynthesis protein BioC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.923
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
   
 0.729
AIF45513.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.451
AIF44347.1
Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
Your Current Organism:
Virgibacillus sp. SK37
NCBI taxonomy Id: 403957
Other names: V. sp. SK37
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