Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Gbem_0366PilZ domain protein. (329 aa)    
Predicted Functional Partners:
Gbem_0379
Sensor histidine kinase response regulator, PAS domain-containing; Domains: PAS, HisKA, HATPase_c, REC.
  
  
 0.876
motA
Flagellar basal body stator protein MotA.
  
 
 0.641
motB
Flagellar basal body stator protein MotB.
  
 
 0.640
flgK
Flagellar hook-associated protein FlgK.
  
  
 0.634
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.603
flgM
Negative regulator of flagellin synthesis FlgM.
  
  
 0.601
Gbem_0364
Hypothetical protein.
       0.572
fliA
RNA polymerase sigma-28 factor for flagellar operon; Belongs to the sigma-70 factor family.
  
  
 0.565
cheV
Response receiver scaffold protein CheV; Domains: CheW, REC.
  
  
 0.536
cheAY40H-2
Sensor histidine kinase CheA and response receiver CheY associated with MCPs of class 40H.
  
  
 0.505
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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