STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_0441Cupin superfamily barrel domain protein. (132 aa)    
Predicted Functional Partners:
Gbem_0442
Hydrolase or acyltransferase, alpha/beta fold family.
  
  
 0.684
Gbem_3749
Hypothetical protein.
 
  
 0.607
Gbem_0440
Winged helix-turn-helix transcriptional regulator, MarR family.
       0.517
Gbem_0443
4-oxalocrotonate tautomerase superfamily protein.
       0.501
Gbem_2220
Hypothetical protein.
  
     0.496
fdtC/fdtA
dTDP-3-amino-3,6-dideoxy-D-galactose N-acetyltransferase and dTDP-6-deoxy-D-hex-4-ulose isomerase.
  
  
 0.477
Gbem_0438
Protein kinase, ABC1 domain-containing, putative; Domains: ABC1.
 
     0.445
Gbem_2508
Glycosyltransferase.
 
  
 0.443
Gbem_3740
SAM-dependent methyltransferase, type 11, and glycosyltransferase, TPR domain-containing.
  
  
 0.433
Gbem_0602
TPR domain protein.
 
  
 0.426
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.