STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_0472Lytic transglycosylase, SLT, LysM and LysM domain-containing; Domains: SLT, LysM, LysM. (484 aa)    
Predicted Functional Partners:
flgG
Flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
  
 
 0.814
flgF
Flagellar basal body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
  
 
 0.814
Gbem_0473
TPR domain protein.
       0.646
secG
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
    0.593
pal-2
Peptidoglycan-binding outer membrane lipoprotein Pal, OmpA family; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.581
fliE
Flagellar hook-basal body complex protein FliE.
  
  
 0.577
pal
Peptidoglycan-binding outer membrane lipoprotein Pal, OmpA family; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.575
Gbem_1752
N-acetylmuramyl-L-alanine amidase.
 
   
 0.572
Gbem_0207
Pentapeptide repeat domain protein.
   
 
 0.567
Gbem_1132
Peptidoglycan-binding outer membrane protein, OMP_b-brl and OmpA domain-containing; Domains: OMP_b-brl, OmpA.
 
 
 0.567
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.