STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_0792ABC transporter, ATP-binding/membrane protein. (577 aa)    
Predicted Functional Partners:
Gbem_1932
Amino acid ABC transporter, ATP-binding protein.
 
    
0.904
Gbem_2216
Long-chain acyl-CoA synthetase; Acyl-(acyl carrier protein) ligase, acyl carrier, [acyl-]glycerolphosphate acyltransferase fusion protein.
  
 
 0.804
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.749
Gbem_2106
Flavin oxidoreductase, PfaD family, putative.
  
 0.703
Gbem_2559
ATPase, AAA family.
   
 0.693
Gbem_2586
ABC transporter, ATP-binding protein.
 
 0.677
Gbem_0013
ABC transporter, ATP-binding protein.
 0.647
Gbem_2105
Polyketide synthase.
  
 
 0.609
Gbem_3719
TPR domain protein.
   
 0.600
lolD-1
Lipoprotein release ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   
0.556
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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