Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gbem_1069Periplasmic polysaccharide biosynthesis/export lipoprotein. (227 aa)    
Predicted Functional Partners:
Gbem_1070
Polysaccharide chain length determinant protein.
 
 
 0.982
Gbem_1770
Polysaccharide chain length determinant protein.
 
 
 0.942
Gbem_1064
Undecaprenyl-phosphate glycosylphosphotransferase.
 
  
 0.893
Gbem_1072
Protein tyrosine kinase, putative.
 
 
 0.892
Gbem_1605
Polysaccharide chain length determinant protein.
 
 
 0.821
Gbem_1771
Protein tyrosine kinase, putative.
 
 
 0.820
Gbem_1071
ATPase, putative.
 
     0.809
Gbem_1768
Undecaprenyl-phosphate glycosylphosphotransferase.
 
  
 0.805
Gbem_2580
ABC transporter, ATP-binding protein.
  
  
 0.803
Gbem_1068
FemAB superfamily protein.
 
     0.777
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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