STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_1237Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family. (467 aa)    
Predicted Functional Partners:
ccoP
Cytochrome c oxidase, cbb3-type, diheme subunit.
 0.999
Gbem_1234
Cytochrome c, 1 heme-binding site.
 
 0.999
Gbem_1236
Cytochrome c oxidase, cbb3-type, subunit II.
 0.999
Gbem_1233
Iron-sulfur cluster-binding oxidoreductase.
 
  
 0.991
Gbem_3336
Lipoprotein cytochrome c, 1 heme-binding site.
 
 
 0.982
Gbem_1232
FixH superfamily protein.
  
 
 0.969
ctaB
Protoheme IX farnesyltransferase.
    
 0.956
ccoN
Cytochrome c oxidase, cbb3-type, subunit I.
  
  
0.934
coxC
Cytochrome c oxidase, coo3-type, subunit III.
  
 
 0.920
coxB
Cytochrome c oxidase, coo3-type, cytochrome c subunit II, one heme-binding site; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 0.920
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.