STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_1638ATPase, putative. (291 aa)    
Predicted Functional Partners:
Gbem_1770
Polysaccharide chain length determinant protein.
 
     0.726
Gbem_1639
Hypothetical protein.
       0.712
Gbem_1640
Hypothetical protein.
       0.661
epsH
Exopolysaccharide synthesis membrane protein H (exosortase).
 
    0.659
Gbem_1296
Transcriptional response regulator; Domains: REC, HTH8.
  
     0.551
Gbem_1775
FemAB superfamily protein.
 
     0.538
Gbem_1769
Periplasmic polysaccharide biosynthesis/export protein.
 
     0.534
Gbem_1806
Sensor histidine kinase, GAF domain-containing; Domains: GAF, HisKA, HATPase_c.
  
     0.517
epsI
Exopolysaccharide synthesis periplasmic protein I.
 
    0.505
Gbem_1788
O-antigen polymerase, putative.
 
     0.477
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.