STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_1663Response receiver; Domains: REC. (135 aa)    
Predicted Functional Partners:
Gbem_2536
Sensor histidine kinase, CHASE, PAS and PAS domain-containing; Domains: CHASE, PAS, PAS, HisKA, HATPase_c.
 
 
 0.925
Gbem_1227
Sensor histidine kinase response regulator, Cache_1, HAMP, PAS, PAS and HPT domain-containing; Domains: Cache_1, HAMP, PAS, PAS, HisKA, HATPase_c, REC, HPT.
 
 
 0.914
Gbem_3275
Sensor histidine kinase response regulator, PAS domain-containing; Domains: PAS, HisKA, HATPase_c, REC.
 
 
 0.913
fgrL
Domains: REC, PAS, GAF, HisKA, HATPase_c.
 
 
 0.894
Gbem_0379
Sensor histidine kinase response regulator, PAS domain-containing; Domains: PAS, HisKA, HATPase_c, REC.
 
 
 0.891
Gbem_0065
Response receiver histidine kinase response regulator; Domains: REC, HisKA, HATPase_c, REC.
 
 
 0.885
nuoBCD
NADH dehydrogenase I, B/C/D subunits; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 20 kDa subunit family. In the C-terminal section; belongs to the complex I 49 [...]
   
   0.814
Gbem_1664
FAD-dependent oxidoreductase, putative.
       0.775
Gbem_0811
Sensor histidine kinase response regulator, Hpt domain-containing; Domains: HisKA, HATPase_c, REC, Hpt.
 
 
 0.763
Gbem_3051
Sensor histidine kinase response regulator, PAS and GAF domain-containing; Domains: PAS, GAF, HisKA, HATPase_c, REC.
 
 
 0.761
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.