Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gbem_1663Response receiver; Domains: REC. (135 aa)    
Predicted Functional Partners:
Gbem_2536
Sensor histidine kinase, CHASE, PAS and PAS domain-containing; Domains: CHASE, PAS, PAS, HisKA, HATPase_c.
 
 
 0.902
Gbem_1227
Sensor histidine kinase response regulator, Cache_1, HAMP, PAS, PAS and HPT domain-containing; Domains: Cache_1, HAMP, PAS, PAS, HisKA, HATPase_c, REC, HPT.
 
 
 0.895
Gbem_3275
Sensor histidine kinase response regulator, PAS domain-containing; Domains: PAS, HisKA, HATPase_c, REC.
 
 
 0.886
fgrL
Domains: REC, PAS, GAF, HisKA, HATPase_c.
 
 
 0.839
Gbem_0065
Response receiver histidine kinase response regulator; Domains: REC, HisKA, HATPase_c, REC.
 
 
 0.837
nuoBCD
NADH dehydrogenase I, B/C/D subunits; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 20 kDa subunit family. In the C-terminal section; belongs to the complex I 49 [...]
   
   0.834
Gbem_0379
Sensor histidine kinase response regulator, PAS domain-containing; Domains: PAS, HisKA, HATPase_c, REC.
 
 
 0.833
Gbem_1664
FAD-dependent oxidoreductase, putative.
       0.772
Gbem_0811
Sensor histidine kinase response regulator, Hpt domain-containing; Domains: HisKA, HATPase_c, REC, Hpt.
 
 
 0.740
Gbem_1505
Sensor histidine kinase response regulator, HAMP and Hpt domain-containing; Domains: HAMP, HisKA, HATPase_c, REC, Hpt.
 
 
 0.730
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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