Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gbem_1985Nuclease, putative. (193 aa)    
Predicted Functional Partners:
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.573
hybB-2
Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, cytochrome b subunit.
       0.547
Gbem_2405
FliK domain protein.
  
     0.537
Gbem_3578
Acyltransferase, putative.
   
  
 0.535
Gbem_0827
Fatty acid hydroxylase superfamily protein.
   
    0.491
Gbem_3910
Sterol desaturase-related protein.
   
    0.491
fliI
Flagellum-specific ATPase FliI.
   
    0.476
rhlE-1
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 0.471
rhlB
ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
    
 0.471
rhlE-2
ATP-dependent RNA helicase RhlE.
    
 0.471
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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