Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Gbem_2001Lipoprotein of unknown function DUF330. (196 aa)    
Predicted Functional Partners:
Gbem_1999
Membrane protein PqiA.
 
  
 0.968
Gbem_1998
Membrane protein PqiA.
 
  
 0.967
Gbem_2000
ABC transporter, periplasmic substrate-binding protein, MCE family.
 
   
 0.962
Gbem_0820
Lipoprotein, putative.
  
     0.521
glk
Glucose 6-kinase; Belongs to the bacterial glucokinase family.
       0.512
Gbem_0768
Hypothetical protein.
  
     0.481
Gbem_0525
DUF748 repeat protein.
  
    0.437
ihfA-1
Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.414
Gbem_1997
Transcriptional regulator, MerR family.
       0.414
Gbem_0691
HNH endonuclease family protein.
  
     0.410
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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