Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Gbem_2003Transcriptional regulator, Ros/MucR family. (186 aa)    
Predicted Functional Partners:
Gbem_3267
Hypothetical protein.
  
     0.659
Gbem_1345
Helix-turn-helix metal-dependent transcriptional regulator, ArsR subfamily, and SAM-dependent methyltransferase, type 11.
  
   
 0.567
Gbem_1668
Hypothetical protein.
  
     0.567
Gbem_1566
Hypothetical protein.
  
    0.564
Gbem_3208
YdcF-like protein of unknown function DUF218.
  
     0.514
Gbem_2004
Peptidylprolyl cis-trans isomerase, FKBP-type.
       0.448
Gbem_1751
Protein of unknown function, MJ0042_CXXC and DUF3426 domain-containing.
  
     0.447
Gbem_1876
Hypothetical protein.
  
     0.444
glk
Glucose 6-kinase; Belongs to the bacterial glucokinase family.
       0.440
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.421
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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