Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_2007Hypothetical protein. (59 aa)    
Predicted Functional Partners:
cheX-3
Protein phosphoaspartate phosphatase CheX.
  
     0.708
Gbem_3843
Response regulator; Domains: REC.
  
 
   0.689
Gbem_2008
Helix-turn-helix transcriptional regulator, MerR family.
 
    
0.655
Gbem_1362
Protein of unknown function DUF2201, VWFA superfamily.
  
     0.645
fliO
Flagellar biogenesis protein FliO.
  
    0.631
Gbem_0694
Pentapeptide repeat protein.
  
     0.623
Gbem_1196
Protein of unknown function DUF4403.
  
     0.617
pulP
Type II secretion system protein PulP, putative.
  
     0.609
Gbem_0286
Response receiver; Domains: REC.
 
 
 
 0.598
Gbem_3512
Periplasmic energy transduction protein, TonB-related protein.
  
     0.577
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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