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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_2012NERD domain C4-type zinc finger protein. (230 aa)    
Predicted Functional Partners:
por-2
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
  
   0.811
por-1
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
  
   0.659
ssb
Single-strand-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 0.629
bamC-2
Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein.
  
    0.580
bamC-1
Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein.
  
    0.567
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.523
gltB
NADPH-dependent glutamate synthase, glutamine amidotransferase and FMN-binding subunit.
  
    0.516
Gbem_4102
Hypothetical protein.
       0.469
actB
Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like and iron-sulfur cluster-binding subunit ActB; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
    0.463
Gbem_0313
Iron-sulfur cluster-binding oxidoreductase.
   
    0.463
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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