Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gbem_2012NERD domain C4-type zinc finger protein. (230 aa)    
Predicted Functional Partners:
por-2
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
  
   0.793
por-1
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
  
   0.657
bamC-2
Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein.
  
    0.582
bamC-1
Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein.
  
    0.570
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.492
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.491
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.489
rpoC
DNA-directed RNA polymerase, beta-prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.474
Gbem_4102
Hypothetical protein.
       0.469
actB
Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like and iron-sulfur cluster-binding subunit ActB; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
    0.466
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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