STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydA-2Cytochrome bd menaquinol oxidase, subunit I. (441 aa)    
Predicted Functional Partners:
cydB-2
Cytochrome bd menaquinol oxidase, subunit II.
 
 0.999
cydB-1
Cytochrome bd menaquinol oxidase, subunit II.
 
 0.996
cydA-1
Cytochrome bd menaquinol oxidase, subunit I.
  
  
0.935
ccoN
Cytochrome c oxidase, cbb3-type, subunit I.
    
 0.725
Gbem_1237
Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
    
 0.725
ccoP
Cytochrome c oxidase, cbb3-type, diheme subunit.
     
 0.687
nuoBCD
NADH dehydrogenase I, B/C/D subunits; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 20 kDa subunit family. In the C-terminal section; belongs to the complex I 49 [...]
     
 0.674
sco
Cytochrome c oxidase, coo3-type, synthesis factor.
   
  
 0.619
ctaB
Protoheme IX farnesyltransferase.
      
 0.610
bamH
benzoyl-CoA reductase electron transfer protein, putative.
     
 0.593
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.