STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_2119Response receiver; Domains: REC. (131 aa)    
Predicted Functional Partners:
Gbem_2120
Response receiver histidine kinase; Domains: REC, HisKA, HATPase_c.
 
 
 0.959
Gbem_2121
Domains: PAS, PAS, PAS, PAS, PAS, PAS, PAS, HATPase_c.
 
 
 0.916
Gbem_2115
Sensor histidine kinase; Domains: HisKA, HATPase_c.
 
 
 0.885
Gbem_2122
Response receiver sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAS domain-containing; Domains: REC, PAS, PAS, PAS, GGDEF, EAL.
  
 
 0.863
Gbem_0314
Sensor histidine kinase, GAF and PAS domain-containing; Domains: GAF, PAS, HisKA, HATPase_c.
 
 
 0.855
Gbem_3327
Sensor histidine kinase, PAS domain-containing; Domains: PAS, HisKA, HATPase_c.
 
 
 0.853
Gbem_2131
Sensor histidine kinase, PAS, PAS, PAS and PAS domain-containing; Domains: PAS, PAS, PAS, PAS, HisKA, HATPase_c.
 
 
 0.846
Gbem_2455
Sensor histidine kinase, putative heme-binding site; Domains: HisKA, HATPase_c.
 
 
 0.846
Gbem_3141
Sensor histidine kinase; Domains: HisKA, HATPase_c.
 
 
 0.845
Gbem_2129
Sensor histidine kinase; Domains: HisKA, HATPase_c.
 
 
 0.843
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.